Technical notes from projects I built: what problem each repo solved, how the workflow was designed, and what the results showed.
A project story about combining DNA methylation clocks, immune deconvolution, RNA expression, and methylation features to study PAM50 breast cancer subtype classification.
A deep-learning project comparing ESM scoring methods against experimental APP deep mutational scanning data, including epistasis and synthetic fitness landscape analysis.
A practical docking workstation that wraps receptor preparation, ligand handling, pocket selection, Vina/GNINA docking, validation, reporting, and Streamlit UI into one repeatable workflow.
A Snakemake workflow for bacterial whole-genome sequencing that moves from raw reads to assembly, QC, annotation, screening, pangenome analysis, and phylogeny.